Once you have merged the two gedcoms, you create a new gedcom of the merged file and overwrite the tribalpages site. If you have not changed peoples names - all pictures should reattach. BUt those where you changed a middle initial to a full name or such may not, and you will have to reattach them.
It really is very easy. I do it all the time. I would not suggest using FTM as it produces a non-standard gedcom which can cause problems